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Journal of Molecular Biology|April 7, 2024
Enricherator: A Bayesian Method for Inferring Regularized Genome-wide Enrichments from Sequencing Count DataJeremy W Schroeder, P Lydia FreddolinoCell Reports|November 19, 2023
Deep mutational scanning highlights a role for cytosolic regions in Hrd1 functionBrian G Peterson, Jiwon Hwang, Jennifer E Russ, et al.Biorxiv : the Preprint Server for Biology|January 8, 2024
FURNA: a database for function annotations of RNA structuresChengxin Zhang, P Lydia FreddolinoBiorxiv : the Preprint Server for Biology|November 28, 2023
A large-scale assessment of sequence database search tools for homology-based protein function predictionChengxin Zhang, P Lydia FreddolinoBiorxiv : the Preprint Server for Biology|January 23, 2024
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio choleraeYulduz Rakibova, Drew T Dunham, Kimberley D Seed, et al.Nature Communications|September 16, 2023
Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure predictionYang Li, Chengxin Zhang, Chenjie Feng, et al.Genome Announcements|December 21, 2013
Complete Genome Sequence of Bacillus subtilis Strain PY79Jeremy W Schroeder, Lyle A SimmonsBiorxiv : the Preprint Server for Biology|February 20, 2025
ShapeME: A tool and web front-end for de novo discovery of structural motifs underpinning protein-DNA interactionsJeremy W Schroeder, Michael B Wolfe, Lydia FreddolinoBiorxiv : the Preprint Server for Biology|July 9, 2024
Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAsAlyssa M Ekdahl, Tatiana Julien, Sahana Suraj, et al.Molecular Microbiology|August 11, 2017
Pseudomonas aeruginosa defense systems against microbicidal oxidantsBastian Groitl, Jan-Ulrik Dahl, Jeremy W Schroeder, et al.Pageof 5