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Plos Computational Biology|April 22, 2006
Conformational changes in protein loops and helices induced by post-translational phosphorylationEli S Groban, Arjun Narayanan, Matthew P JacobsonProteins|March 30, 2004
High-resolution prediction of protein helix positions and orientationsXin Li, Matthew P Jacobson, Richard A FriesnerPlos Computational Biology|June 23, 2011
A new view of the bacterial cytosol environmentBenjamin P Cossins, Matthew P Jacobson, Victor GuallarProteins|July 6, 2010
Antibodies as a model system for comparative model refinementBenjamin D Sellers, Jerome P Nilmeier, Matthew P JacobsonPhysical Chemistry Chemical Physics : PCCP|January 5, 2007
Molecular mechanics methods for predicting protein-ligand bindingNiu Huang, Chakrapani Kalyanaraman, Katarzyna Bernacki, et al.Trends in Biochemical Sciences|July 7, 2014
Leveraging structure for enzyme function prediction: methods, opportunities, and challengesMatthew P Jacobson, Chakrapani Kalyanaraman, Suwen Zhao, et al.Journal of Chemical Theory and Computation|September 27, 2022
Assessing the Activation of Tyrosine Kinase KIT through Free Energy CalculationsAngélica Sandoval-Pérez, Beth Apsel Winger, Matthew P JacobsonProteins|February 3, 2011
Effects of somatic mutations on CDR loop flexibility during affinity maturationSergio E Wong, Ben D Sellers, Matthew P JacobsonProtein Engineering, Design & Selection : PEDS|June 5, 2012
Computer-aided antibody designDaisuke Kuroda, Hiroki Shirai, Matthew P Jacobson, et al.Journal of Chemical Information and Modeling|May 3, 2016
Simple Predictive Models of Passive Membrane Permeability Incorporating Size-Dependent Membrane-Water PartitionSiegfried S F Leung, Daniel Sindhikara, Matthew P JacobsonPageof 18