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NAR Genomics and Bioinformatics|November 29, 2023
Automatic quality control of single-cell and single-nucleus RNA-seq using valiDropsGabija Kavaliauskaite, Jesper Grud Skat Madsen
Nature Communications|December 20, 2023
JOINTLY: interpretable joint clustering of single-cell transcriptomesAndreas Fønss Møller, Jesper Grud Skat Madsen
Methods in Molecular Biology (Clifton, N.J.)|February 15, 2022
Analysis of Enhancers and Transcriptional Networks in Thermogenic AdipocytesAnne Loft, Maja Worm Andersen, Jesper Grud Skat Madsen, et al.
Nucleic Acids Research|January 8, 2015
iRNA-seq: computational method for genome-wide assessment of acute transcriptional regulation from total RNA-seq dataJesper Grud Skat Madsen, Søren Fisker Schmidt, Bjørk Ditlev Larsen, et al.
Genome Research|June 27, 2015
Acute TNF-induced repression of cell identity genes is mediated by NFκB-directed redistribution of cofactors from super-enhancersSøren Fisker Schmidt, Bjørk Ditlev Larsen, Anne Loft, et al.
Genome Research|December 14, 2017
Integrated analysis of motif activity and gene expression changes of transcription factorsJesper Grud Skat Madsen, Alexander Rauch, Elvira Laila Van Hauwaert, et al.
Diabetologia|January 12, 2022
Glucolipotoxicity promotes the capacity of the glycerolipid/NEFA cycle supporting the secretory response of pancreatic beta cellsLucie Oberhauser, Cecilia Jiménez-Sánchez, Jesper Grud Skat Madsen, et al.
STAR Protocols|June 30, 2021
Isolation of nuclei from mouse white adipose tissues for single-nucleus genomicsElvira Laila Van Hauwaert, Ellen Gammelmark, Anitta Kinga Sárvári, et al.
Cell Reports|December 3, 2015
RNA-Seq and Mass-Spectrometry-Based Lipidomics Reveal Extensive Changes of Glycerolipid Pathways in Brown Adipose Tissue in Response to ColdAnn-Britt Marcher, Anne Loft, Ronni Nielsen, et al.
Biorxiv : the Preprint Server for Biology|April 16, 2025
Single Nucleus Multiome Analysis Reveals Early Inflammatory Response to High-Fat Diet in Mouse Pancreatic IsletsIsabell Victoria Strandby Ernst, Lasse Lehtonen, Sille Marie Nilsson, et al.
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