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Genome Biology|August 1, 2024
aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graphJia Li, Yu Shyr, Qi LiuBiorxiv : the Preprint Server for Biology|October 31, 2023
Single-cell and Spatial Transcriptomics Clustering with an Optimized Adaptive K-Nearest Neighbor GraphJia Li, Yu Shyr, Qi LiuNucleic Acids Research|October 14, 2021
scMRMA: single cell multiresolution marker-based annotationJia Li, Quanhu Sheng, Yu Shyr, et al.Bioinformatics (Oxford, England)|April 28, 2022
Dysregulated ligand-receptor interactions from single-cell transcriptomicsQi Liu, Chih-Yuan Hsu, Jia Li, et al.Cancer Research|December 20, 2023
A Large-Scale Meta-Analysis Reveals Positive Feedback between Macrophages and T Cells That Sensitizes Tumors to ImmunotherapyJing Yang, Qi Liu, Yu ShyrBiomedicines|September 28, 2021
Pan-Cancer Analysis Reveals Common and Specific Relationships between Intragenic miRNAs and Their Host GenesBaohong Liu, Yu Shyr, Qi LiuGenome Biology|March 31, 2026
Benchmarking single-cell tumor immune atlases and application for uncovering cell states related to immunotherapy responseJing Yang, Yu Shyr, Qi LiuBMC Genomics|June 24, 2015
Dysregulated transcription across diverse cancer types reveals the importance of RNA-binding protein in carcinogenesisJing Wang, Qi Liu, Yu ShyrBioinformatics (Oxford, England)|September 4, 2024
A distribution-free and analytic method for power and sample size calculation in single-cell differential expressionChih-Yuan Hsu, Qi Liu, Yu ShyrGenome Research|October 12, 2022
Scalable and model-free detection of spatial patterns and colocalizationQi Liu, Chih-Yuan Hsu, Yu ShyrPageof 1,563