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Scientific Reports|December 1, 2019
NNTox: Gene Ontology-Based Protein Toxicity Prediction Using Neural NetworkAashish Jain, Daisuke KiharaBioinformatics (Oxford, England)|August 31, 2018
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequencesAashish Jain, Daisuke KiharaCurrent Protocols in Protein Science|June 22, 2018
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein FeaturesZiyun Ding, Daisuke KiharaMolecules (Basel, Switzerland)|December 28, 2019
Advances in Structure Modeling Methods for Cryo-Electron Microscopy MapsEman Alnabati, Daisuke KiharaJournal of Bioinformatics and Computational Biology|May 5, 2007
Function prediction of uncharacterized proteinsTroy Hawkins, Daisuke KiharaProteins|January 26, 2012
Detecting local ligand-binding site similarity in nonhomologous proteins by surface patch comparisonLee Sael, Daisuke KiharaProteins|November 29, 2007
Estimating quality of template-based protein models by alignment stabilityHao Chen, Daisuke KiharaMethods in Molecular Biology (Clifton, N.J.)|July 29, 2025
Predicting Protein Functions with Function-Aware Domain Embeddings Using Domain-PFPNabil Ibtehaz, Daisuke KiharaProteins|March 30, 2004
Microbial genomes have over 72% structure assignment by the threading algorithm PROSPECTOR_QDaisuke Kihara, Jeffrey SkolnickInternational Journal of Molecular Sciences|May 27, 2011
Binding ligand prediction for proteins using partial matching of local surface patchesLee Sael, Daisuke KiharaPageof 1,136