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BMC Bioinformatics|July 15, 2006
EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequencesJianjun Hu, Yifeng D Yang, Daisuke KiharaNucleic Acids Research|November 15, 2005
Limitations and potentials of current motif discovery algorithmsJianjun Hu, Bin Li, Daisuke KiharaBMC Bioinformatics|December 17, 2009
Protein-protein docking using region-based 3D Zernike descriptorsVishwesh Venkatraman, Yifeng D Yang, Lee Sael, et al.Protein Science : a Publication of the Protein Society|July 1, 2005
The effect of long-range interactions on the secondary structure formation of proteinsDaisuke KiharaBMC Bioinformatics|December 22, 2010
Improved protein surface comparison and application to low-resolution protein structure dataLee Sael, Daisuke KiharaJournal of Molecular Biology|November 26, 2003
The PDB is a covering set of small protein structuresDaisuke Kihara, Jeffrey SkolnickScientific Reports|December 1, 2019
NNTox: Gene Ontology-Based Protein Toxicity Prediction Using Neural NetworkAashish Jain, Daisuke KiharaBioinformatics (Oxford, England)|August 31, 2018
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequencesAashish Jain, Daisuke KiharaCurrent Protocols in Protein Science|June 22, 2018
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein FeaturesZiyun Ding, Daisuke KiharaMolecules (Basel, Switzerland)|December 28, 2019
Advances in Structure Modeling Methods for Cryo-Electron Microscopy MapsEman Alnabati, Daisuke KiharaPageof 53