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Biorxiv : the Preprint Server for Biology|October 24, 2023
Accurate prediction of protein tertiary structural changes induced by single-site mutations with equivariant graph neural networksSajid Mahmud, Alex Morehead, Jianlin Cheng
Bioinformatics (Oxford, England)|June 5, 2016
UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic samplingDebswapna Bhattacharya, Renzhi Cao, Jianlin Cheng
Bioinformatics (Oxford, England)|December 12, 2017
DNCON2: improved protein contact prediction using two-level deep convolutional neural networksBadri Adhikari, Jie Hou, Jianlin Cheng
BMC Genomics|February 24, 2018
A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact dataOluwatosin Oluwadare, Yuxiang Zhang, Jianlin Cheng
Scientific Reports|March 23, 2019
Hierarchical Reconstruction of High-Resolution 3D Models of Large ChromosomesTuan Trieu, Oluwatosin Oluwadare, Jianlin Cheng
Briefings in Bioinformatics|September 18, 2025
Machine learning methods for gene regulatory network inferenceAkshata Hegde, Tom Nguyen, Jianlin Cheng
Research Square|February 20, 2025
Accurate Prediction of Protein Complex Stoichiometry by Integrating AlphaFold3 and Template InformationJianlin Cheng, Jian Liu, Pawan Neupane
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