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Proteins|April 16, 2019
Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13Jie Hou, Tianqi Wu, Renzhi Cao, et al.Biorxiv : the Preprint Server for Biology|January 18, 2024
CryoVirusDB: A Labeled Cryo-EM Image Dataset for AI-Driven Virus Particle PickingRajan Gyawali, Ashwin Dhakal, Liguo Wang, et al.Bioinformatics (Oxford, England)|February 26, 2024
CryoTransformer: a transformer model for picking protein particles from cryo-EM micrographsAshwin Dhakal, Rajan Gyawali, Liguo Wang, et al.Biorxiv : the Preprint Server for Biology|March 3, 2023
CryoPPP: A Large Expert-Labelled Cryo-EM Image Dataset for Machine Learning Protein Particle PickingAshwin Dhakal, Rajan Gyawali, Liguo Wang, et al.Biorxiv : the Preprint Server for Biology|October 24, 2023
Accurate cryo-EM protein particle picking by integrating the foundational AI image segmentation model and specialized U-NetRajan Gyawali, Ashwin Dhakal, Liguo Wang, et al.Bioinformatics (Oxford, England)|September 11, 2019
Analysis of several key factors influencing deep learning-based inter-residue contact predictionTianqi Wu, Jie Hou, Badri Adhikari, et al.Proteins|February 4, 2021
Combination of deep neural network with attention mechanism enhances the explainability of protein contact predictionChen Chen, Tianqi Wu, Zhiye Guo, et al.BMC Bioinformatics|January 26, 2021
DeepDist: real-value inter-residue distance prediction with deep residual convolutional networkTianqi Wu, Zhiye Guo, Jie Hou, et al.BMC Bioinformatics|December 7, 2016
DeepQA: improving the estimation of single protein model quality with deep belief networksRenzhi Cao, Debswapna Bhattacharya, Jie Hou, et al.Journal of Bioinformatics and Computational Biology|July 20, 2012
Recursive protein modeling: a divide and conquer strategy for Protein Structure Prediction and its case study in CASP9Jianlin Cheng, Jesse Eickholt, Zheng Wang, et al.Pageof 56