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Biomolecules|November 27, 2024
Correction: Giri et al. Improving Protein-Ligand Interaction Modeling with cryo-EM Data, Templates, and Deep Learning in 2021 Ligand Model Challenge. Biomolecules 2023, 13, 132Nabin Giri, Jianlin ChengBiorxiv : the Preprint Server for Biology|January 23, 2024
De Novo Atomic Protein Structure Modeling for Cryo-EM Density Maps Using 3D Transformer and Hidden Markov ModelNabin Giri, Jianlin ChengBioinformatics (Oxford, England)|February 19, 2024
Geometry-complete perceptron networks for 3D molecular graphsAlex Morehead, Jianlin ChengProteins|August 29, 2012
3Drefine: consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimizationDebswapna Bhattacharya, Jianlin ChengMethods in Molecular Biology (Clifton, N.J.)|October 31, 2013
MSACompro: improving multiple protein sequence alignment by predicted structural featuresXin Deng, Jianlin ChengNature Communications|July 1, 2024
De novo atomic protein structure modeling for cryoEM density maps using 3D transformer and HMMNabin Giri, Jianlin ChengBioinformatics Advances|September 5, 2024
Improving protein function prediction by learning and integrating representations of protein sequences and function labelsFrimpong Boadu, Jianlin ChengBriefings in Bioinformatics|June 10, 2024
HiCDiff: single-cell Hi-C data denoising with diffusion modelsYanli Wang, Jianlin ChengBMC Genomics|October 30, 2015
Deciphering the association between gene function and spatial gene-gene interactions in 3D human genome conformationRenzhi Cao, Jianlin ChengMethods in Molecular Biology (Clifton, N.J.)|April 27, 2016
Protein Residue Contacts and Prediction MethodsBadri Adhikari, Jianlin ChengPageof 56