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Protein Science : a Publication of the Protein Society|November 8, 2011
An iterative self-refining and self-evaluating approach for protein model quality estimationZheng Wang, Jianlin ChengBMC Bioinformatics|July 27, 2014
Enhancing HMM-based protein profile-profile alignment with structural features and evolutionary coupling informationXin Deng, Jianlin ChengBMC Bioinformatics|January 27, 2018
CONFOLD2: improved contact-driven ab initio protein structure modelingBadri Adhikari, Jianlin ChengBMC Bioinformatics|April 20, 2022
DISTEMA: distance map-based estimation of single protein model accuracy with attentive 2D convolutional neural networkXiao Chen, Jianlin ChengNucleic Acids Research|January 28, 2014
Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact dataTuan Trieu, Jianlin ChengBiomolecules|November 27, 2024
Correction: Giri et al. Improving Protein-Ligand Interaction Modeling with cryo-EM Data, Templates, and Deep Learning in 2021 Ligand Model Challenge. <i>Biomolecules</i> 2023, <i>13</i>, 132Nabin Giri, Jianlin ChengBiorxiv : the Preprint Server for Biology|January 23, 2024
De Novo Atomic Protein Structure Modeling for Cryo-EM Density Maps Using 3D Transformer and Hidden Markov ModelNabin Giri, Jianlin ChengBioinformatics (Oxford, England)|February 19, 2024
Geometry-complete perceptron networks for 3D molecular graphsAlex Morehead, Jianlin ChengMolecular Informatics|July 29, 2016
Tree and Hashing Data Structures to Speed up Chemical Searches: Analysis and ExperimentsRamzi Nasr, Thomas Kristensen, Pierre BaldiNeural Networks : the Official Journal of the International Neural Network Society|September 23, 2017
Learning in the machine: The symmetries of the deep learning channelPierre Baldi, Peter Sadowski, Zhiqin LuPageof 54