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Bioinformatics (Oxford, England)|July 14, 2020
ClonArch: visualizing the spatial clonal architecture of tumorsJiaqi Wu, Mohammed El-KebirBioinformatics (Oxford, England)|November 14, 2018
SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and errorMohammed El-KebirBioinformatics (Oxford, England)|July 14, 2020
Sampling and summarizing transmission trees with multi-strain infectionsPalash Sashittal, Mohammed El-KebirJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 27, 2023
Consensus Tree Under the Ancestor-Descendant Distance is NP-HardYuanyuan Qi, Mohammed El-KebirGenome Research|June 21, 2023
Modeling and predicting cancer clonal evolution with reinforcement learningStefan Ivanovic, Mohammed El-KebirGenome Biology|April 8, 2025
CNRein: an evolution-aware deep reinforcement learning algorithm for single-cell DNA copy number callingStefan Ivanovic, Mohammed El-KebirAlgorithms for Molecular Biology : AMB|July 7, 2021
Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumorsLeah L Weber, Mohammed El-KebirAlgorithms for Molecular Biology : AMB|June 9, 2026
Dolphyin: a combinatorial algorithm for identifying 1-Dollo phylogenies in cancerDaniel W Feng, Mohammed El-KebirAlgorithms for Molecular Biology : AMB|September 10, 2019
Implications of non-uniqueness in phylogenetic deconvolution of bulk DNA samples of tumorsYuanyuan Qi, Dikshant Pradhan, Mohammed El-KebirBioinformatics (Oxford, England)|September 13, 2019
Summarizing the solution space in tumor phylogeny inference by multiple consensus treesNuraini Aguse, Yuanyuan Qi, Mohammed El-KebirPageof 45