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BMC Bioinformatics
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November 6, 2019
A binning tool to reconstruct viral haplotypes from assembled contigs
Jiao Chen, Jiayu Shang, Jianrong Wang, et al.
Bioinformatics (Oxford, England)
|
April 22, 2023
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer
Yongxin Ji, Jiayu Shang, Xubo Tang, et al.
Frontiers in Microbiology
|
January 2, 2023
Phage family classification under <i>Caudoviricetes</i>: A review of current tools using the latest ICTV classification framework
Yilin Zhu, Jiayu Shang, Cheng Peng, et al.
Briefings in Bioinformatics
|
June 30, 2022
Accurate identification of bacteriophages from metagenomic data using Transformer
Jiayu Shang, Xubo Tang, Ruocheng Guo, et al.
Nucleic Acids Research
|
July 10, 2023
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer
Xubo Tang, Jiayu Shang, Yongxin Ji, et al.
Bioinformatics (Oxford, England)
|
November 23, 2024
ViraLM: empowering virus discovery through the genome foundation model
Cheng Peng, Jiayu Shang, Jiaojiao Guan, et al.
Briefings in Bioinformatics
|
November 15, 2023
PhaGenus: genus-level classification of bacteriophages using a Transformer model
Jiaojiao Guan, Cheng Peng, Jiayu Shang, et al.
Bioinformatics Advances
|
August 29, 2023
PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data
Jiayu Shang, Cheng Peng, Herui Liao, et al.
Genome Biology
|
February 7, 2026
PlasRAG: comprehensive plasmid characterization and retrieval through sequence-text alignment
Yongxin Ji, Jiaojiao Guan, Herui Liao, et al.
Nucleic Acids Research
|
March 26, 2026
Fast and accurate identification of emerging viral reassortment from genome sequences
Dehan Cai, Jiayu Shang, Cheng Peng, et al.
Page
of 4
Search research articles
Search
Showing results (11-20 of 34) with videos related to
Sort By:
Page
of 4
BMC Bioinformatics
|
November 6, 2019
A binning tool to reconstruct viral haplotypes from assembled contigs
Jiao Chen, Jiayu Shang, Jianrong Wang, et al.
Bioinformatics (Oxford, England)
|
April 22, 2023
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer
Yongxin Ji, Jiayu Shang, Xubo Tang, et al.
Frontiers in Microbiology
|
January 2, 2023
Phage family classification under <i>Caudoviricetes</i>: A review of current tools using the latest ICTV classification framework
Yilin Zhu, Jiayu Shang, Cheng Peng, et al.
Briefings in Bioinformatics
|
June 30, 2022
Accurate identification of bacteriophages from metagenomic data using Transformer
Jiayu Shang, Xubo Tang, Ruocheng Guo, et al.
Nucleic Acids Research
|
July 10, 2023
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer
Xubo Tang, Jiayu Shang, Yongxin Ji, et al.
Bioinformatics (Oxford, England)
|
November 23, 2024
ViraLM: empowering virus discovery through the genome foundation model
Cheng Peng, Jiayu Shang, Jiaojiao Guan, et al.
Briefings in Bioinformatics
|
November 15, 2023
PhaGenus: genus-level classification of bacteriophages using a Transformer model
Jiaojiao Guan, Cheng Peng, Jiayu Shang, et al.
Bioinformatics Advances
|
August 29, 2023
PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data
Jiayu Shang, Cheng Peng, Herui Liao, et al.
Genome Biology
|
February 7, 2026
PlasRAG: comprehensive plasmid characterization and retrieval through sequence-text alignment
Yongxin Ji, Jiaojiao Guan, Herui Liao, et al.
Nucleic Acids Research
|
March 26, 2026
Fast and accurate identification of emerging viral reassortment from genome sequences
Dehan Cai, Jiayu Shang, Cheng Peng, et al.
Page
of 4