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Biorxiv : the Preprint Server for Biology|April 17, 2023
MANGEM: a web app for Multimodal Analysis of Neuronal Gene expression, Electrophysiology and MorphologyRobert Hermod Olson, Noah Cohen Kalafut, Daifeng WangPatterns (New York, N.Y.)|November 30, 2023
MANGEM: A web app for multimodal analysis of neuronal gene expression, electrophysiology, and morphologyRobert Hermod Olson, Noah Cohen Kalafut, Daifeng WangBMC Genomics|January 1, 2020
ManiNetCluster: a novel manifold learning approach to reveal the functional links between gene networksNam D Nguyen, Ian K Blaby, Daifeng WangPlos Computational Biology|October 21, 2016
DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory NetworksDaifeng Wang, Fei He, Sergei Maslov, et al.Bioinformatics (Oxford, England)|December 11, 2020
ECMarker: interpretable machine learning model identifies gene expression biomarkers predicting clinical outcomes and reveals molecular mechanisms of human disease in early stagesTing Jin, Nam D Nguyen, Flaminia Talos, et al.Cell Systems|March 28, 2020
Comparing Technological Development and Biological Evolution from a Network PerspectiveKoon-Kiu Yan, Daifeng Wang, Kun Xiong, et al.Advances in Experimental Medicine and Biology|July 27, 2019
Pulse SILAC Approaches to the Measurement of Cellular DynamicsJustin Snider, Daifeng Wang, Daniel F Bogenhagen, et al.STAR Protocols|October 11, 2024
Protocol for comparative gene expression data analysis between brains and organoids using a cloud-based web appXiang Huang, Pubudu Kumarage, Soraya Sandoval, et al.Plos One|January 19, 2012
Principal-oscillation-pattern analysis of gene expressionDaifeng Wang, Ari Arapostathis, Claus O Wilke, et al.Biorxiv : the Preprint Server for Biology|November 14, 2023
NetREm: Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulationSaniya Khullar, Xiang Huang, Raghu Ramesh, et al.Pageof 89