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Nucleic Acids Research|May 16, 2025
LitSense 2.0: AI-powered biomedical information retrieval with sentence and passage level knowledge discoveryLana Yeganova, Won Kim, Shubo Tian, et al.
BMC Structural Biology|August 11, 2007
Structural footprinting in protein structure comparison: the impact of structural fragmentsElena Zotenko, Rezarta Islamaj Dogan, W John Wilbur, et al.
Genomics, Proteomics & Bioinformatics|September 15, 2006
Characterization of binding sites of eukaryotic transcription factorsJiang Qian, Jimmy Lin, Donald J Zack
AMIA ... Annual Symposium Proceedings. AMIA Symposium|January 24, 2007
Evaluation of PICO as a knowledge representation for clinical questionsXiaoli Huang, Jimmy Lin, Dina Demner-Fushman
Arxiv|October 1, 2025
MedCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information RetrievalQiao Jin, Won Kim, Qingyu Chen, et al.
Bioinformatics (Oxford, England)|November 6, 2023
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrievalQiao Jin, Won Kim, Qingyu Chen, et al.
Proteins|April 5, 2002
Structural genomics analysis: characteristics of atypical, common, and horizontally transferred foldsHedi Hegyi, Jimmy Lin, Dov Greenbaum, et al.
Briefings in Functional Genomics|January 9, 2010
Understanding protein phosphorylation on a systems levelJimmy Lin, Zhi Xie, Heng Zhu, et al.
Nucleic Acids Research|April 26, 2019
LitSense: making sense of biomedical literature at sentence levelAlexis Allot, Qingyu Chen, Sun Kim, et al.
Database : the Journal of Biological Databases and Curation|June 26, 2014
BioC implementations in Go, Perl, Python and RubyWanli Liu, Rezarta Islamaj Doğan, Dongseop Kwon, et al.
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