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BMC Bioinformatics|November 6, 2019
A comparative study of topology-based pathway enrichment analysis methodsJing Ma, Ali Shojaie, George MichailidisBioinformatics (Oxford, England)|July 1, 2016
Network-based pathway enrichment analysis with incomplete network informationJing Ma, Ali Shojaie, George MichailidisBiometrika|March 22, 2012
Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphsAli Shojaie, George MichailidisBioinformatics (Oxford, England)|September 9, 2010
Discovering graphical Granger causality using the truncating lasso penaltyAli Shojaie, George MichailidisJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 4, 2009
Analysis of gene sets based on the underlying regulatory networkAli Shojaie, George MichailidisStatistical Applications in Genetics and Molecular Biology|July 6, 2010
Network enrichment analysis in complex experimentsAli Shojaie, George MichailidisJournal of Machine Learning Research : JMLR|July 16, 2021
Network Granger Causality with Inherent Grouping StructureSumanta Basu, Ali Shojaie, George MichailidisPlos One|March 4, 2014
Inferring regulatory networks by combining perturbation screens and steady state gene expression profilesAli Shojaie, Alexandra Jauhiainen, Michael Kallitsis, et al.Genetic Epidemiology|October 18, 2021
REHE: Fast variance components estimation for linear mixed modelsKun Yue, Jing Ma, Timothy Thornton, et al.Plos Computational Biology|June 11, 2021
netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysisMichael Hellstern, Jing Ma, Kun Yue, et al.Pageof 389