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Cell Host & Microbe|October 10, 2024
Hospitalization throws the preterm gut microbiome off-keyJing Qian, Emily N Yeo, Matthew R OlmPlos Biology|August 15, 2025
Teaching right from wrong: Developing a model of early immune educationParsa Ghadermazi, Matthew R OlmCell Host & Microbe|February 15, 2024
Milk to mucus: How B. fragilis colonizes the gutMatthew R Olm, Noel T MuellerCell Host & Microbe|November 13, 2025
Mapping the oral microbiome opens links to periodontitisColin D Sempeck, Matthew R OlmBiorxiv : the Preprint Server for Biology|June 4, 2026
ZipStrain Enables Rapid and Precise Strain-Resolved MetagenomicsParsa Ghadermazi, Joanne B Emerson, Matthew R OlmBiorxiv : the Preprint Server for Biology|June 4, 2026
IgA Targeting in the Infant Gut Is Modulated by Diet and Increasingly Directed Towards Persistent SpeciesJing Qian, Parsa Ghadermazi, Soren Maret, et al.The ISME Journal|July 26, 2017
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replicationMatthew R Olm, Christopher T Brown, Brandon Brooks, et al.Nature Biotechnology|November 8, 2016
Measurement of bacterial replication rates in microbial communitiesChristopher T Brown, Matthew R Olm, Brian C Thomas, et al.Msystems|January 24, 2018
Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut MicrobiomeSumayah F Rahman, Matthew R Olm, Michael J Morowitz, et al.Biorxiv : the Preprint Server for Biology|December 4, 2023
Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut MicrobiomeMatthew R Olm, Sean P Spencer, Evelyn Lemus Silva, et al.Pageof 97