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Briefings in Bioinformatics|May 18, 2023
CIForm as a Transformer-based model for cell-type annotation of large-scale single-cell RNA-seq dataJing Xu, Aidi Zhang, Fang Liu, et al.
Bioinformatics (Oxford, England)|April 2, 2023
STGRNS: an interpretable transformer-based method for inferring gene regulatory networks from single-cell transcriptomic dataJing Xu, Aidi Zhang, Fang Liu, et al.
IEEE Transactions on Computational Biology and Bioinformatics|September 5, 2025
kmmDE: a Non-parametric Method for Differential Expression Analysis of Time-course RNA-seq Data Using Maximum Mean DiscrepancyKangchen Liu, Jing Xu, Haoran Ma, et al.
Briefings in Functional Genomics|August 29, 2023
EIEPCF: accurate inference of functional gene regulatory networks by eliminating indirect effects from confounding factorsHuixiang Peng, Jing Xu, Kangchen Liu, et al.
International Journal of Molecular Sciences|September 28, 2023
A Genome-Wide Analysis of the Pentatricopeptide Repeat Protein Gene Family in Two Kiwifruit Species with an Emphasis on the Role of RNA Editing in Pathogen StressAidi Zhang, Yuhong Xiong, Fang Liu, et al.
Genes|October 27, 2022
Dynamic Network Biomarker Analysis Reveals the Critical Phase Transition of Fruit Ripening in GrapevineTengfei Wang, Huixiang Peng, Yingying Cao, et al.
International Journal of Molecular Sciences|April 27, 2024
Genome-Wide Identification and Expression Analysis of Kiwifruit Leucine-Rich Repeat Receptor-Like Proteins Reveal Their Roles in Biotic and Abiotic Stress ResponsesYingying Cao, Congxiao Zhang, Fang Liu, et al.
Frontiers in Plant Science|January 26, 2026
Genome-wide identification and in silico analysis of GSTs reveals hormone mediated stress response in saffronMuqaddas Bano, Xingnuo Li, Fang Liu, et al.
Horticulture Research|March 13, 2026
The jujube pan-TE map identifies transposable element insertions associated with domestication and pericarp developmentXingnuo Li, Aidi Zhang, Muqaddas Bano, et al.
Plants (Basel, Switzerland)|April 3, 2021
The Draft Genome of a Flat Peach (Prunus persica L. cv. '124 Pan') Provides Insights into Its Good Fruit Flavor TraitsAidi Zhang, Hui Zhou, Xiaohan Jiang, et al.
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