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Journal of Computational Chemistry|July 30, 2025
Feasibility of Combining Biomolecular Conformational Sampling Techniques for Molecular Dynamics SimulationJinzen Ikebe, Hidetoshi KonoPlos Computational Biology|March 12, 2016
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling SimulationJinzen Ikebe, Shun Sakuraba, Hidetoshi KonoJournal of Computational Chemistry|October 30, 2013
Adaptive lambda square dynamics simulation: an efficient conformational sampling method for biomoleculesJinzen Ikebe, Shun Sakuraba, Hidetoshi KonoBiophysical Reviews|May 17, 2017
Enhanced sampling simulations to construct free-energy landscape of protein-partner substrate interactionJinzen Ikebe, Koji Umezawa, Junichi HigoBiophysical Reviews|February 21, 2012
Enhanced and effective conformational sampling of protein molecular systems for their free energy landscapesJunichi Higo, Jinzen Ikebe, Narutoshi Kamiya, et al.Protein Science : a Publication of the Protein Society|November 18, 2010
Ab initio simulation of a 57-residue protein in explicit solvent reproduces the native conformation in the lowest free-energy clusterJinzen Ikebe, Daron M Standley, Haruki Nakamura, et al.Journal of Agricultural and Food Chemistry|February 17, 2025
Computational Design of Burkholderia cepacia Lipase Mutants that Show Enhanced Stereoselectivity in the Production of l-MentholJinzen Ikebe, Kazunori Yoshida, Satoru Ishihara, et al.Biomolecules|June 28, 2014
Conformational Ensembles of an Intrinsically Disordered Protein pKID with and without a KIX Domain in Explicit Solvent Investigated by All-Atom Multicanonical Molecular DynamicsKoji Umezawa, Jinzen Ikebe, Mitsunori Takano, et al.Biopolymers|January 31, 2009
Conformational requirement on peptides to exert laminin's activities and search for protein segments with laminin's activitiesKoji Umezawa, Jinzen Ikebe, Motoyoshi Nomizu, et al.Scientific Reports|October 4, 2021
Enzyme modification using mutation site prediction method for enhancing the regioselectivity of substrate reaction sitesJinzen Ikebe, Munenori Suzuki, Aya Komori, et al.Pageof 10