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Biorxiv : the Preprint Server for Biology|July 16, 2025
SHADE: A Multilevel Bayesian Approach to Modeling Directional Spatial Associations in TissuesJoel Eliason, Michele Peruzzi, Arvind RaoPlos Computational Biology|February 4, 2026
SHADE: A multilevel Bayesian framework for modeling directional spatial interactions in tissue microenvironmentsJoel Eliason, Michele Peruzzi, Arvind RaoBiorxiv : the Preprint Server for Biology|November 28, 2023
Investigating Ecological Interactions in the Tumor Microenvironment using Joint Species Distribution Models for Point PatternsJoel Eliason, Arvind RaoScientific Reports|January 11, 2026
Informed spatially aware patterns for multiplexed immunofluorescence dataSagnik Bhadury, Michele Peruzzi, Satwik Acharyya, et al.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|March 5, 2025
Tensor decomposition to identify context-aware spatial neighborhoods in the tumor microenvironmentReva Kulkarni, Gauri Patel, Joel Eliason, et al.Biorxiv : the Preprint Server for Biology|July 28, 2023
DIMPLE: AN R PACKAGE TO QUANTIFY, VISUALIZE, AND MODEL SPATIAL CELLULAR INTERACTIONS FROM MULTIPLEX IMAGING WITH DISTANCE MATRICESMaria Masotti, Nathaniel Osher, Joel Eliason, et al.Patterns (New York, N.Y.)|December 18, 2023
DIMPLE: An R package to quantify, visualize, and model spatial cellular interactions from multiplex imaging with distance matricesMaria Masotti, Nathaniel Osher, Joel Eliason, et al.Biorxiv : the Preprint Server for Biology|June 29, 2026
Structured Schemas for Provenance-Rich, LLM-Assisted QSP Model CalibrationJoel Eliason, Aleksander S PopelCPT: Pharmacometrics & Systems Pharmacology|July 31, 2026
Structured Schemas for Provenance-Rich, LLM-Assisted QSP Model CalibrationJoel Eliason, Aleksander S PopelJournal of Machine Learning Research : JMLR|July 27, 2022
Spatial Multivariate Trees for Big Data Bayesian RegressionMichele Peruzzi, David B DunsonPageof 23