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NAR Genomics and Bioinformatics|June 10, 2025
Precise and scalable metagenomic profiling with sample-tailored minimizer librariesJohan Nyström-Persson, Nishad Bapatdhar, Samik GhoshBioinformatics (Oxford, England)|March 11, 2021
Compact and evenly distributed k-mer binning for genomic sequencesJohan Nyström-Persson, Gabriel Keeble-Gagnère, Niamat ZawadPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|March 21, 2008
Using force covariance to derive effective stochastic interactions in dissipative particle dynamicsAnders Eriksson, Martin Nilsson Jacobi, Johan Nyström, et al.The Journal of Chemical Physics|May 2, 2009
Bottom-up derivation of an effective thermostat for united atoms simulations of waterAnders Eriksson, Martin Nilsson Jacobi, Johan Nyström, et al.The Journal of Chemical Physics|July 16, 2008
Effective thermostat induced by coarse graining of simple point charge waterAnders Eriksson, Martin Nilsson Jacobi, Johan Nyström, et al.Journal of Physics. Condensed Matter : an Institute of Physics Journal|August 6, 2011
A method for estimating the interactions in dissipative particle dynamics from particle trajectoriesAnders Eriksson, Martin Nilsson Jacobi, Johan Nyström, et al.Scientific Reports|May 5, 2017
Interactive Toxicogenomics: Gene set discovery, clustering and analysis in ToxygatesJohan Nyström-Persson, Yayoi Natsume-Kitatani, Yoshinobu Igarashi, et al.Bioinformatics (Oxford, England)|September 20, 2013
Toxygates: interactive toxicity analysis on a hybrid microarray and linked data platformJohan Nyström-Persson, Yoshinobu Igarashi, Maori Ito, et al.Plos One|June 12, 2014
Integrated pathway clusters with coherent biological themes for target prioritisationYi-An Chen, Lokesh P Tripathi, Benoit H Dessailly, et al.Pageof 2