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Nucleic Acids Research|June 28, 2005
GeneMark: web software for gene finding in prokaryotes, eukaryotes and virusesJohn Besemer, Mark BorodovskyCurrent Protocols in Bioinformatics|April 23, 2008
Prokaryotic gene prediction using GeneMark and GeneMark.hmmMark Borodovsky, Ryan Mills, John Besemer, et al.Methodology and Computing in Applied Probability|February 15, 2011
Uniform Accuracy of the Maximum Likelihood Estimates for Probabilistic Models of Biological SequencesSvetlana Ekisheva, Mark BorodovskyInternational Journal of Bioinformatics Research and Applications|December 1, 2007
Probabilistic models for biological sequences: selection and Maximum Likelihood estimationSvetlana Ekisheva, Mark BorodovskyCurrent Protocols in Microbiology|February 11, 2014
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suiteMark Borodovsky, Alex LomsadzeCurrent Protocols in Bioinformatics|September 9, 2011
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suiteMark Borodovsky, Alex LomsadzeCurrent Protocols in Bioinformatics|September 9, 2011
Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ESMark Borodovsky, Alex LomsadzeJournal of Bioinformatics and Computational Biology|June 18, 2010
Genetack: frameshift identification in protein-coding sequences by the Viterbi algorithmIvan Antonov, Mark BorodovskyBriefings in Bioinformatics|July 21, 2004
Probabilistic methods of identifying genes in prokaryotic genomes: connections to the HMM theoryRajeev K Azad, Mark BorodovskyBioinformatics (Oxford, England)|January 31, 2004
Effects of choice of DNA sequence model structure on gene identification accuracyRajeev K Azad, Mark BorodovskyPageof 7