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Briefings in Bioinformatics|June 10, 2006
Statistical significance in biological sequence analysisAlexander Yu Mitrophanov, Mark BorodovskyMathematical Biosciences|April 24, 2007
Convergence rate estimation for the TKF91 model of biological sequence length evolutionAlexander Y Mitrophanov, Mark BorodovskyConference Proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference|February 3, 2007
Protein secondary structure prediction with semi Markov HMMsZafer Aydin, Yucel Altunbasak, Mark BorodovskyBioinformatics (Oxford, England)|November 7, 2012
MetaGeneTack: ab initio detection of frameshifts in metagenomic sequencesShiyuyun Tang, Ivan Antonov, Mark BorodovskyGenome Research|June 12, 2024
GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomesTomáš Brůna, Alexandre Lomsadze, Mark BorodovskyNucleic Acids Research|November 20, 2012
GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequencesIvan Antonov, Pavel Baranov, Mark BorodovskyNucleic Acids Research|April 21, 2010
Ab initio gene identification in metagenomic sequencesWenhan Zhu, Alexandre Lomsadze, Mark BorodovskyNucleic Acids Research|April 15, 2015
Identification of protein coding regions in RNA transcriptsShiyuyun Tang, Alexandre Lomsadze, Mark BorodovskyBiorxiv : the Preprint Server for Biology|January 30, 2023
A new gene finding tool GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomesTomas Bruna, Alexandre Lomsadze, Mark BorodovskyJournal of Molecular Biology|May 27, 2023
MgCod: Gene Prediction in Phage Genomes with Multiple Genetic CodesAaron Pfennig, Alexandre Lomsadze, Mark BorodovskyPageof 7