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International Journal of Bioinformatics Research and Applications|July 31, 2009
Frameshift detection in prokaryotic genomic sequencesAndrey Kislyuk, Alexandre Lomsadze, Alla L Lapidus, et al.Nucleic Acids Research|November 22, 2013
UnSplicer: mapping spliced RNA-Seq reads in compact genomes and filtering noisy splicingPaul D Burns, Yang Li, Jian Ma, et al.Methods in Molecular Biology (Clifton, N.J.)|April 26, 2019
Whole-Genome Annotation with BRAKERKatharina J Hoff, Alexandre Lomsadze, Mark Borodovsky, et al.Nucleic Acids Research|November 25, 2003
Improving gene annotation of complete viral genomesRyan Mills, Michael Rozanov, Alexandre Lomsadze, et al.Nucleic Acids Research|November 30, 2005
Gene identification in novel eukaryotic genomes by self-training algorithmAlexandre Lomsadze, Vardges Ter-Hovhannisyan, Yury O Chernoff, et al.Genome Research|September 2, 2008
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised trainingVardges Ter-Hovhannisyan, Alexandre Lomsadze, Yury O Chernoff, et al.Briefings in Bioinformatics|April 27, 2018
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics toolsIvan V Antonov, Evgeny Mazurov, Mark Borodovsky, et al.BMC Bioinformatics|November 26, 2021
TSEBRA: transcript selector for BRAKERLars Gabriel, Katharina J Hoff, Tomáš Brůna, et al.Bioinformatics (Oxford, England)|November 13, 2015
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUSKatharina J Hoff, Simone Lange, Alexandre Lomsadze, et al.BMC Bioinformatics|May 5, 2010
Bacillus anthracis genome organization in light of whole transcriptome sequencingJeffrey Martin, Wenhan Zhu, Karla D Passalacqua, et al.Pageof 7