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Nucleic Acids Research|May 1, 2025
L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engineGiacomo B Marino, John E Evangelista, Daniel J B Clarke, et al.BMC Bioinformatics|September 13, 2022
Transforming L1000 profiles to RNA-seq-like profiles with deep learningMinji Jeon, Zhuorui Xie, John E Evangelista, et al.Bioinformatics Advances|April 4, 2022
Gene and drug landing page aggregatorDaniel J B Clarke, Maxim V Kuleshov, Zhuorui Xie, et al.Database : the Journal of Biological Databases and Curation|March 31, 2021
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learningEryk Kropiwnicki, John E Evangelista, Daniel J Stein, et al.Research Square|July 24, 2020
The COVID-19 Gene and Drug Set LibraryMaxim V Kuleshov, Daniel J B Clarke, Eryk Kropiwnicki, et al.Current Protocols|March 29, 2021
Gene Set Knowledge Discovery with EnrichrZhuorui Xie, Allison Bailey, Maxim V Kuleshov, et al.Patterns (New York, N.Y.)|August 25, 2020
The COVID-19 Drug and Gene Set LibraryMaxim V Kuleshov, Daniel J Stein, Daniel J B Clarke, et al.Frontiers in Immunology|March 25, 2021
Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-SequencingDaniel J B Clarke, Alison W Rebman, Allison Bailey, et al.Pageof 1