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John J Ferrie

Showing results (1-10 of 28) with videos related to

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The Journal of Physical Chemistry. B|June 12, 2020
A Unified De Novo Approach for Predicting the Structures of Ordered and Disordered ProteinsJohn J Ferrie, E James Petersson
The Journal of Physical Chemistry. B|November 16, 2020
Improved Modeling of Thioamide FRET Quenching by Including Conformational Restriction and Coulomb CouplingJimin Yoon, John J Ferrie, E James Petersson
Chemical Communications (Cambridge, England)|February 1, 2018
Dithioamide substitutions in proteins: effects on thermostability, peptide binding, and fluorescence quenching in calmodulinChristopher R Walters, John J Ferrie, E James Petersson
Genes & Development|December 31, 2021
The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer-promoter communicationJonathan P Karr, John J Ferrie, Robert Tjian, et al.
Molecular Cell|October 20, 2022
"Structure"-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulationJohn J Ferrie, Jonathan P Karr, Robert Tjian, et al.
Chemical Communications (Cambridge, England)|August 27, 2020
Correction: Rosetta custom score functions accurately predict ΔΔG of mutations at protein-protein interfaces using machine learningSumant R Shringari, Sam Giannakoulias, John J Ferrie, et al.
Chemical Communications (Cambridge, England)|May 23, 2020
Rosetta custom score functions accurately predict ΔΔG of mutations at protein-protein interfaces using machine learningSumant R Shringari, Sam Giannakoulias, John J Ferrie, et al.
Scientific Reports|September 16, 2021
Biomolecular simulation based machine learning models accurately predict sites of tolerability to the unnatural amino acid acridonylalanineSam Giannakoulias, Sumant R Shringari, John J Ferrie, et al.
International Journal of Molecular Sciences|August 14, 2025
Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy PerturbationXinning Li, Ryann Perez, John J Ferrie, et al.
Chembiochem : a European Journal of Chemical Biology|April 6, 2019
Fluorescent Probes for Studying Thioamide Positional Effects on Proteolysis Reveal Insight into Resistance to Cysteine ProteasesChunxiao Liu, Taylor M Barrett, Xing Chen, et al.
Pageof 3

Showing results (1-10 of 28) with videos related to

Sort By:
Pageof 3
The Journal of Physical Chemistry. B|June 12, 2020
A Unified De Novo Approach for Predicting the Structures of Ordered and Disordered ProteinsJohn J Ferrie, E James Petersson
The Journal of Physical Chemistry. B|November 16, 2020
Improved Modeling of Thioamide FRET Quenching by Including Conformational Restriction and Coulomb CouplingJimin Yoon, John J Ferrie, E James Petersson
Chemical Communications (Cambridge, England)|February 1, 2018
Dithioamide substitutions in proteins: effects on thermostability, peptide binding, and fluorescence quenching in calmodulinChristopher R Walters, John J Ferrie, E James Petersson
Genes & Development|December 31, 2021
The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer-promoter communicationJonathan P Karr, John J Ferrie, Robert Tjian, et al.
Molecular Cell|October 20, 2022
"Structure"-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulationJohn J Ferrie, Jonathan P Karr, Robert Tjian, et al.
Chemical Communications (Cambridge, England)|August 27, 2020
Correction: Rosetta custom score functions accurately predict ΔΔG of mutations at protein-protein interfaces using machine learningSumant R Shringari, Sam Giannakoulias, John J Ferrie, et al.
Chemical Communications (Cambridge, England)|May 23, 2020
Rosetta custom score functions accurately predict ΔΔG of mutations at protein-protein interfaces using machine learningSumant R Shringari, Sam Giannakoulias, John J Ferrie, et al.
Scientific Reports|September 16, 2021
Biomolecular simulation based machine learning models accurately predict sites of tolerability to the unnatural amino acid acridonylalanineSam Giannakoulias, Sumant R Shringari, John J Ferrie, et al.
International Journal of Molecular Sciences|August 14, 2025
Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy PerturbationXinning Li, Ryann Perez, John J Ferrie, et al.
Chembiochem : a European Journal of Chemical Biology|April 6, 2019
Fluorescent Probes for Studying Thioamide Positional Effects on Proteolysis Reveal Insight into Resistance to Cysteine ProteasesChunxiao Liu, Taylor M Barrett, Xing Chen, et al.
Pageof 3