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Biorxiv : the Preprint Server for Biology|August 12, 2025
MetaSage: Machine Learning-Based Prioritization of Metabolic Regulators from Multi-Omics DataChenwei Wang, John M Elizarraras, Bing ZhangNature Cancer|December 11, 2024
Mapping the functional network of human cancer through machine learning and pan-cancer proteogenomicsZhiao Shi, Jonathan T Lei, John M Elizarraras, et al.Biorxiv : the Preprint Server for Biology|August 8, 2025
XL-Ranker: A Computational Workflow for Prioritizing Protein-Protein Interactions from Cross-Linking Mass Spectrometry DataWenrong Chen, John M Elizarraras, Fenglong Jiao, et al.Nucleic Acids Research|May 29, 2024
WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omicsJohn M Elizarraras, Yuxing Liao, Zhiao Shi, et al.Cell Reports. Medicine|April 21, 2026
A 15-layer multi-omics analysis of gastric cancer ecotypes provides therapeutic insightsYuefan Wang, Lindsey K Olsen, Fenglong Jiao, et al.Nature Cancer|June 12, 2026
Integrated proteogenomic and metabolomic profiling of acute myeloid leukemias to identify molecular subtypes and associated therapy targetsShih-Chun A Chu, Yi Hsiao, Chenwei Wang, et al.Pageof 1