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Plos Computational Biology|September 9, 2020
Tempora: Cell trajectory inference using time-series single-cell RNA sequencing dataThinh N Tran, Gary D BaderBiophysical Journal|July 24, 2018
Single-Cell RNA Sequencing: A New Window into Cell Scale DynamicsSabyasachi Dasgupta, Gary D Bader, Sidhartha GoyalBMC Bioinformatics|January 15, 2003
An automated method for finding molecular complexes in large protein interaction networksGary D Bader, Christopher W V HogueMethods in Molecular Biology (Clifton, N.J.)|August 31, 2011
Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment mapDaniele Merico, Ruth Isserlin, Gary D BaderNature Biotechnology|October 10, 2009
How to visually interpret biological data using networksDaniele Merico, David Gfeller, Gary D BaderNature Communications|February 22, 2025
Interpretable single-cell factor decomposition using sciREDDelaram Pouyabahar, Tallulah Andrews, Gary D BaderBiorxiv : the Preprint Server for Biology|August 16, 2024
Interpretable single-cell factor decomposition using sciREDDelaram Pouyabahar, Tallulah Andrews, Gary D BaderResearch Square|August 16, 2024
Interpretable single-cell factor decomposition using sciREDDelaram Pouyabahar, Tallulah Andrews, Gary D BaderNature Methods|May 5, 2015
MIMP: predicting the impact of mutations on kinase-substrate phosphorylationOmar Wagih, Jüri Reimand, Gary D BaderScientific Reports|October 4, 2013
The mutational landscape of phosphorylation signaling in cancerJüri Reimand, Omar Wagih, Gary D BaderPageof 27