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Nucleic Acids Research|January 10, 2003
BIND: the Biomolecular Interaction Network DatabaseGary D Bader, Doron Betel, Christopher W V HogueF1000Research|November 11, 2016
AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotationsMike Kucera, Ruth Isserlin, Arkady Arkhangorodsky, et al.Database : the Journal of Biological Databases and Curation|January 15, 2011
The Biomolecular Interaction Network Database in PSI-MI 2.5Ruth Isserlin, Rashad A El-Badrawi, Gary D BaderSource Code for Biology and Medicine|April 9, 2011
WordCloud: a Cytoscape plugin to create a visual semantic summary of networksLayla Oesper, Daniele Merico, Ruth Isserlin, et al.Bioinformatics (Oxford, England)|August 7, 2013
The BioPAX ValidatorIgor Rodchenkov, Emek Demir, Chris Sander, et al.Cell Reports Methods|July 10, 2024
Fatecode enables cell fate regulator prediction using classification-supervised autoencoder perturbationMehrshad Sadria, Anita Layton, Sidhartha Goyal, et al.Methods in Molecular Biology (Clifton, N.J.)|August 31, 2011
Displaying chemical information on a biological network using CytoscapeIain M Wallace, Gary D Bader, Guri Giaever, et al.Plos One|January 7, 2014
Coordinate microRNA-mediated regulation of protein complexes in prostate cancerMohammed Alshalalfa, Gary D Bader, Tarek A Bismar, et al.BMC Cardiovascular Disorders|January 18, 2013
Integrative pathway dissection of molecular mechanisms of moxLDL-induced vascular smooth muscle phenotype transformationGeorge S Karagiannis, Jochen Weile, Gary D Bader, et al.Current Protocols in Bioinformatics|September 10, 2014
Biological network exploration with Cytoscape 3Gang Su, John H Morris, Barry Demchak, et al.Pageof 27