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Wiley Interdisciplinary Reviews. Systems Biology and Medicine|June 7, 2016
CRISPR/Cas9 genome editing throws descriptive 3-D genome folding studies for a loopJonathan A Beagan, Jennifer E Phillips-CreminsNature Genetics|January 12, 2020
On the existence and functionality of topologically associating domainsJonathan A Beagan, Jennifer E Phillips-CreminsMethods (San Diego, Calif.)|May 18, 2018
5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer designJi Hun Kim, Katelyn R Titus, Wanfeng Gong, et al.Neuroscience Letters|June 3, 2014
Widespread neuron-specific transgene expression in brain and spinal cord following synapsin promoter-driven AAV9 neonatal intracerebroventricular injectionJesse R McLean, Gaynor A Smith, Emily M Rocha, et al.Genome Research|May 25, 2017
YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitmentJonathan A Beagan, Michael T Duong, Katelyn R Titus, et al.Nature Neuroscience|May 27, 2020
Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expressionJonathan A Beagan, Elissa D Pastuzyn, Lindsey R Fernandez, et al.Nature Neuroscience|July 25, 2020
Publisher Correction: Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expressionJonathan A Beagan, Elissa D Pastuzyn, Lindsey R Fernandez, et al.Nature Communications|January 11, 2022
Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in miceDeborah Y Kwon, Bing Xu, Peng Hu, et al.Nature Methods|June 26, 2019
LADL: light-activated dynamic looping for endogenous gene expression controlJi Hun Kim, Mayuri Rege, Jacqueline Valeri, et al.Cell|September 4, 2018
Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain BoundariesJames H Sun, Linda Zhou, Daniel J Emerson, et al.Pageof 2