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Plos Computational Biology|December 20, 2023
Using mixture density networks to emulate a stochastic within-host model of Francisella tularensis infectionJonathan Carruthers, Thomas Finnie
Journal of Theoretical Biology|March 10, 2023
Simplified within-host and Dose-response Models of SARS-CoV-2Jingsi Xu, Jonathan Carruthers, Thomas Finnie, et al.
The Science of the Total Environment|October 24, 2023
Constructing urban ecological corridors to reflect local species diversity and conservation objectivesRunning Chen, Jonathan Carruthers-Jones, Steve Carver, et al.
The Science of the Total Environment|August 18, 2019
The call of the wild: Investigating the potential for ecoacoustic methods in mapping wilderness areasJonathan Carruthers-Jones, Alice Eldridge, Patrice Guyot, et al.
Journal of the Royal Society, Interface|July 1, 2025
Introducing a framework for within-host dynamics and mutations modelling of H5N1 influenza infection in humansDaniel Higgins, Joshua Looker, Robert Sunnucks, et al.
Frontiers in Microbiology|July 24, 2018
A Novel Stochastic Multi-Scale Model of <i>Francisella tularensis</i> Infection to Predict Risk of Infection in a LaboratoryJonathan Carruthers, Martín López-García, Joseph J Gillard, et al.
Plos Computational Biology|June 2, 2020
Stochastic dynamics of Francisella tularensis infection and replicationJonathan Carruthers, Grant Lythe, Martín López-García, et al.
Biorxiv : the Preprint Server for Biology|July 9, 2025
A mathematical framework for human neutrophil state transitions inferred from single-cell RNA sequence dataGustaf Wigerblad, Jonathan Carruthers, Sumanta Ray, et al.
Frontiers in Immunology|November 10, 2025
A mathematical framework for human neutrophil state transitions inferred from single-cell RNA sequence dataGustaf Wigerblad, Jonathan Carruthers, Sumanta Ray, et al.
The Science of the Total Environment|July 30, 2025
The urban mycobiome of transport environments: Characterising the fungal composition of passive dust samples collected in railway stations in EnglandEmma Marczylo, Sameirah Macchiarulo, James Isaac, et al.
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