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Integrative Biology : Quantitative Biosciences From Nano to Macro|June 18, 2016
Pathway-based network modeling finds hidden genes in shRNA screen for regulators of acute lymphoblastic leukemiaJennifer L Wilson, Simona Dalin, Sara Gosline, et al.Plos Computational Biology|May 6, 2010
A quantitative model of transcriptional regulation reveals the influence of binding location on expressionKenzie D MacIsaac, Kinyui A Lo, William Gordon, et al.Nucleic Acids Research|May 18, 2011
ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening dataAlex Lan, Ilan Y Smoly, Guy Rapaport, et al.Plos Computational Biology|August 1, 2017
PCSF: An R-package for network-based interpretation of high-throughput dataMurodzhon Akhmedov, Amanda Kedaigle, Renan Escalante Chong, et al.Plos Computational Biology|April 21, 2016
Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software PackageNurcan Tuncbag, Sara J C Gosline, Amanda Kedaigle, et al.Scientific Reports|January 24, 2020
A Multi-Omics Interpretable Machine Learning Model Reveals Modes of Action of Small MoleculesNatasha L Patel-Murray, Miriam Adam, Nhan Huynh, et al.BMC Bioinformatics|March 9, 2006
An improved map of conserved regulatory sites for Saccharomyces cerevisiaeKenzie D MacIsaac, Ting Wang, D Benjamin Gordon, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 4, 2013
Sharing information to reconstruct patient-specific pathways in heterogeneous diseasesAnthony Gitter, Alfredo Braunstein, Andrea Pagnani, et al.Nature Communications|November 4, 2023
Integrative analysis reveals a conserved role for the amyloid precursor protein in proteostasis during agingVanitha Nithianandam, Hassan Bukhari, Matthew J Leventhal, et al.Journal of Huntington'S Disease|January 8, 2013
Poly-glutamine expanded huntingtin dramatically alters the genome wide binding of HSF1Laura Riva, Martina Koeva, Ferah Yildirim, et al.Pageof 27