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Database : the Journal of Biological Databases and Curation|September 19, 2014
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictionsJonathan R Karr, Nolan C Phillips, Markus W CovertBMC Bioinformatics|August 23, 2013
WholeCellViz: data visualization for whole-cell modelsRuby Lee, Jonathan R Karr, Markus W CovertBioinformatics (Oxford, England)|July 16, 2008
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coliMarkus W Covert, Nan Xiao, Tiffany J Chen, et al.Chaos (Woodbury, N.Y.)|July 5, 2013
Towards a whole-cell modeling approach for synthetic biologyOliver Purcell, Bonny Jain, Jonathan R Karr, et al.Nucleic Acids Research|November 24, 2012
WholeCellKB: model organism databases for comprehensive whole-cell modelsJonathan R Karr, Jayodita C Sanghvi, Derek N Macklin, et al.Nature Methods|November 5, 2013
Accelerated discovery via a whole-cell modelJayodita C Sanghvi, Sergi Regot, Silvia Carrasco, et al.BMC Bioinformatics|May 25, 2015
NetworkPainter: dynamic intracellular pathway animation in CytobankJonathan R Karr, Harendra Guturu, Edward Y Chen, et al.Mbio|September 21, 2017
Combining Comprehensive Analysis of Off-Site Lambda Phage Integration with a CRISPR-Based Means of Characterizing Downstream PhysiologyYu Tanouchi, Markus W CovertNucleic Acids Research|May 24, 2023
Whole-cell modeling of E. coli confirms that in vitro tRNA aminoacylation measurements are insufficient to support cell growth and predicts a positive feedback mechanism regulating arginine biosynthesisHeejo Choi, Markus W CovertPageof 9