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Progress in Molecular Biology and Translational Science|July 16, 2026
Computational approaches for protein complex modeling for intermediate resolution cryo-EM mapsJoon Hong Park, Genki Terashi, Daisuke KiharaNature Communications|April 26, 2018
De novo main-chain modeling for EM maps using MAINMASTGenki Terashi, Daisuke KiharaJournal of Structural Biology|August 4, 2018
De novo main-chain modeling with MAINMAST in 2015/2016 EM Model ChallengeGenki Terashi, Daisuke KiharaProteins|August 24, 2017
Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solventGenki Terashi, Daisuke KiharaMethods in Molecular Biology (Clifton, N.J.)|October 5, 2019
Path-LZerD: Predicting Assembly Order of Multimeric Protein ComplexesGenki Terashi, Charles Christoffer, Daisuke KiharaNature Methods|October 2, 2023
CryoREAD: de novo structure modeling for nucleic acids in cryo-EM maps using deep learningXiao Wang, Genki Terashi, Daisuke KiharaStructure (London, England : 1993)|March 7, 2017
Variability of Protein Structure Models from Electron MicroscopyLyman Monroe, Genki Terashi, Daisuke KiharaMethods in Molecular Biology (Clifton, N.J.)|July 5, 2020
Protein Structure Modeling from Cryo-EM Map Using MAINMAST and MAINMAST-GUI PluginGenki Terashi, Yuhong Zha, Daisuke KiharaActa Crystallographica. Section D, Structural Biology|January 5, 2023
Protein model refinement for cryo-EM maps using AlphaFold2 and the DAQ scoreGenki Terashi, Xiao Wang, Daisuke KiharaJournal of Chemical Information and Modeling|March 21, 2020
MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with SymmetryGenki Terashi, Yuki Kagaya, Daisuke KiharaPageof 29