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Theoretical Population Biology|December 17, 2020
Computing the probability of gene trees concordant with the species tree in the multispecies coalescentJakub Truszkowski, Celine Scornavacca, Fabio PardiBioinformatics (Oxford, England)|January 31, 2019
Rapid alignment-free phylogenetic identification of metagenomic sequencesBenjamin Linard, Krister Swenson, Fabio PardiBulletin of Mathematical Biology|May 8, 2010
Robustness of phylogenetic inference based on minimum evolutionFabio Pardi, Sylvain Guillemot, Olivier GascuelSystematic Biology|June 10, 2025
Link between the Birth-Death Process and the Kingman Coalescent-Applications to Phylogenetic EpidemiologyJosselin Cornuault, Fabio Pardi, Celine ScornavaccaBioinformatics (Oxford, England)|June 9, 2016
Accurate self-correction of errors in long reads using de Bruijn graphsLeena Salmela, Riku Walve, Eric Rivals, et al.Bioinformatics (Oxford, England)|April 3, 2023
dipwmsearch: a Python package for searching di-PWM motifsMarie Mille, Julie Ripoll, Bastien Cazaux, et al.BMC Bioinformatics|June 17, 2016
Read mapping on de Bruijn graphsAntoine Limasset, Bastien Cazaux, Eric Rivals, et al.Genome Biology|March 30, 2013
CRAC: an integrated approach to the analysis of RNA-seq readsNicolas Philippe, Mikaël Salson, Thérèse Commes, et al.BMC Bioinformatics|April 18, 2015
YOC, A new strategy for pairwise alignment of collinear genomesRaluca Uricaru, Célia Michotey, Hélène Chiapello, et al.Bioinformatics (Oxford, England)|October 27, 2005
GSMA: software implementation of the genome search meta-analysis methodFabio Pardi, Douglas F Levinson, Cathryn M LewisPageof 7