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Bioinformatics (Oxford, England)|January 18, 2021
Nebulosa recovers single-cell gene expression signals by kernel density estimationJose Alquicira-Hernandez, Joseph E PowellGenome Biology|December 13, 2019
scPred: accurate supervised method for cell-type classification from single-cell RNA-seq dataJose Alquicira-Hernandez, Anuja Sathe, Hanlee P Ji, et al.Gigascience|September 11, 2019
ascend: R package for analysis of single-cell RNA-seq dataAnne Senabouth, Samuel W Lukowski, Jose Alquicira Hernandez, et al.Genome Medicine|February 22, 2022
DevKidCC allows for robust classification and direct comparisons of kidney organoid datasetsSean B Wilson, Sara E Howden, Jessica M Vanslambrouck, et al.American Journal of Human Genetics|May 8, 2026
The impact of sex on the immune system explored at the single-cell levelSeyhan Yazar, Jose Alquicira-Hernandez, Kristof Wing, et al.Nature Aging|April 10, 2026
Single-cell analysis of the human immune system reveals sex-specific dynamics of immunosenescenceMaria Sopena-Rios, Aida Ripoll-Cladellas, Fatemeh Omidi, et al.Nature Genetics|September 26, 2024
Identifying genetic variants that influence the abundance of cell states in single-cell dataLaurie Rumker, Saori Sakaue, Yakir Reshef, et al.BMC Medicine|October 15, 2025
Protein translation dysregulation and immune cell evasion mediated by IFN and immunoproteasome downregulation define metastatic clones in HPV-related cancer of the oropharynxVenessa T Chin, Walter Muskovic, Rachael A McCloy, et al.Science (New York, N.Y.)|April 7, 2022
Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune diseaseSeyhan Yazar, Jose Alquicira-Hernandez, Kristof Wing, et al.Medrxiv : the Preprint Server for Health Sciences|March 30, 2023
Mapping the dynamic genetic regulatory architecture of <i>HLA</i> genes at single-cell resolutionJoyce B Kang, Amber Z Shen, Saori Sakaue, et al.Pageof 2