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Frontiers in Bioinformatics|August 21, 2023
Molecular timetrees using relaxed clocks and uncertain phylogeniesJose Barba-Montoya, Sudip Sharma, Sudhir KumarBMC Ecology and Evolution|May 13, 2021
Molecular and morphological clocks for estimating evolutionary divergence timesJose Barba-Montoya, Qiqing Tao, Sudhir KumarBioinformatics (Oxford, England)|July 12, 2021
Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogeniesQiqing Tao, Jose Barba-Montoya, Sudhir KumarGenome Biology and Evolution|November 9, 2021
Assessing Rapid Relaxed-Clock Methods for Phylogenomic DatingJose Barba-Montoya, Qiqing Tao, Sudhir KumarBioinformatics (Oxford, England)|December 31, 2020
Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violatedJose Barba-Montoya, Qiqing Tao, Sudhir KumarBiorxiv : the Preprint Server for Biology|August 2, 2024
Integrating Phylogenies with Chronology to Assemble the Tree of LifeJose Barba-Montoya, Jack M Craig, Sudhir KumarFrontiers in Bioinformatics|May 15, 2025
Integrating phylogenies with chronology to assemble the tree of lifeJose Barba-Montoya, Jack M Craig, Sudhir KumarMolecular Ecology Resources|September 4, 2020
Molecular dating for phylogenies containing a mix of populations and species by using Bayesian and RelTime approachesBeatriz Mello, Qiqing Tao, Jose Barba-Montoya, et al.Biorxiv : the Preprint Server for Biology|May 15, 2024
Discovering Fragile Clades And Causal Sequences In Phylogenomics By Evolutionary Sparse LearningSudip Sharma, Sudhir KumarMolecular Biology and Evolution|October 28, 2022
Taming the Selection of Optimal Substitution Models in Phylogenomics by Site Subsampling and UpsamplingSudip Sharma, Sudhir KumarPageof 133