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Biorxiv : the Preprint Server for Biology|March 22, 2023
An atlas of gene regulatory networks for memory CD4 + T cells in youth and old ageJoseph A Wayman, Alyssa Thomas, Anthony Bejjani, et al.Biorxiv : the Preprint Server for Biology|October 3, 2025
Epithelial-intrinsic nitric oxide synthase 2 sustains host-microbiota dynamics that promote colitisSeika Hashimoto-Hill, Bryce Hunt, Sekani Cole, et al.Plos Computational Biology|January 31, 2023
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networksTareian A Cazares, Faiz W Rizvi, Balaji Iyer, et al.Biorxiv : the Preprint Server for Biology|February 26, 2024
Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease riskJoseph A Wayman, Zi Yang, Elizabeth Angerman, et al.Biorxiv : the Preprint Server for Biology|June 3, 2024
Cholestasis alters polarization and suppressor function of hepatic regulatory T cellsRamesh Kudira, Zi F Yang, Immaculeta Osuji, et al.Journal of Hepatology|June 22, 2025
Bile acids engage the SIPR-STAT3 signaling axis to modulate regulatory T cell responses in fibrosing cholangiopathiesRamesh Kudira, Zi F Yang, Immaculeta Osuji, et al.Science Translational Medicine|March 30, 2022
Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primatesAndrea Toth, Shelby Steinmeyer, Paranthaman Kannan, et al.Biorxiv : the Preprint Server for Biology|May 25, 2026
Gene regulatory networks define human airway epithelial cell types and their distinct responses to type I interferonAnthony T Bejjani, Alec P Pankow, Ava R Lamberty, et al.Biorxiv : the Preprint Server for Biology|January 23, 2026
High-resolution promoter interaction analysis implicates genes involved in the activation of Type 3 Innate Lymphoid Cells in autoimmune disease riskValeriya Malysheva, Helen Ray-Jones, Nora Lakes, et al.Nature Genetics|August 5, 2026
High-resolution promoter interaction analysis implicates genes involved in activation of type 3 innate lymphoid cells in immune disease riskValeriya Malysheva, Helen Ray-Jones, Nora Lakes, et al.Pageof 3