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Biorxiv : the Preprint Server for Biology|April 17, 2023
Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation taskJoseph D Valencia, David A HendrixPlos Computational Biology|October 12, 2023
Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation taskJoseph D Valencia, David A HendrixBMC Genomics|June 5, 2019
LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novoJoseph D Valencia, Hani Z GirgisBioinformatics (Oxford, England)|March 14, 2025
bpRNA-CosMoS: a robust and efficient RNA structural comparison method using k-mer based cosine similarityBrittany Lasher, David A HendrixRNA (New York, N.Y.)|February 9, 2023
bpRNA-align: improved RNA secondary structure global alignment for comparing and clustering RNA structuresBrittany Lasher, David A HendrixFrontiers in Molecular Biosciences|February 10, 2022
Predicting Drosha and Dicer Cleavage Sites with DeepMirCutJimmy Bell, David A HendrixPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 30, 2016
A DEEP LEARNING APPROACH FOR CANCER DETECTION AND RELEVANT GENE IDENTIFICATIONPadideh Danaee, Reza Ghaeini, David A HendrixPlos Computational Biology|July 20, 2026
Position-dependent codon occurrence is associated with patterns of translational efficiency and ribosomal occupancy in the human transcriptomeKaavya Subramanian, Nathan Waugh, Cole Shanks, et al.Proceedings of the National Academy of Sciences of the United States of America|December 24, 2008
How the Dorsal gradient works: insights from postgenome technologiesJoung-Woo Hong, David A Hendrix, Dmitri Papatsenko, et al.Nucleic Acids Research|July 10, 2018
A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potentialSteven T Hill, Rachael Kuintzle, Amy Teegarden, et al.Pageof 4