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Plos One|May 18, 2018
So many genes, so little time: A practical approach to divergence-time estimation in the genomic eraStephen A Smith, Joseph W Brown, Joseph F WalkerBioinformatics (Oxford, England)|February 9, 2017
Phyx: phylogenetic tools for unixJoseph W Brown, Joseph F Walker, Stephen A SmithSystematic Biology|June 13, 2018
Analyzing Contentious Relationships and Outlier Genes in PhylogenomicsJoseph F Walker, Joseph W Brown, Stephen A SmithSystematic Biology|November 21, 2019
Phylogenetic Conflicts, Combinability, and Deep Phylogenomics in PlantsStephen A Smith, Nathanael Walker-Hale, Joseph F Walker, et al.American Journal of Botany|May 11, 2018
Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of lifeJames B Pease, Joseph W Brown, Joseph F Walker, et al.American Journal of Botany|May 11, 2018
Constructing a broadly inclusive seed plant phylogenyStephen A Smith, Joseph W BrownSystematic Biology|September 26, 2017
The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time EstimatesJoseph W Brown, Stephen A SmithMolecular Phylogenetics and Evolution|August 12, 2017
The development of scientific consensus: Analyzing conflict and concordance among avian phylogeniesJoseph W Brown, Ning Wang, Stephen A SmithMolecular Biology and Evolution|July 14, 2020
Intragenic Conflict in Phylogenomic Data SetsStephen A Smith, Nathanael Walker-Hale, Joseph F WalkerPlos Computational Biology|October 3, 2013
Analyzing and synthesizing phylogenies using tree alignment graphsStephen A Smith, Joseph W Brown, Cody E HinchliffPageof 23