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BMC Bioinformatics|August 9, 2014
PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene treesJoseph M E X Lucas, Matthieu Muffato, Hugues Roest CrolliusBioessays : News and Reviews in Molecular, Cellular and Developmental Biology|January 18, 2008
Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of timeMatthieu Muffato, Hugues Roest CrolliusNucleic Acids Research|November 30, 2012
Genomicus: five genome browsers for comparative genomics in eukaryotaAlexandra Louis, Matthieu Muffato, Hugues Roest CrolliusCell Reports|March 25, 2015
The 3D organization of chromatin explains evolutionary fragile genomic regionsCamille Berthelot, Matthieu Muffato, Judith Abecassis, et al.Bioinformatics (Oxford, England)|February 27, 2010
Genomicus: a database and a browser to study gene synteny in modern and ancestral genomesMatthieu Muffato, Alexandra Louis, Charles-Edouard Poisnel, et al.Nucleic Acids Research|November 8, 2014
Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomicsAlexandra Louis, Nga Thi Thuy Nguyen, Matthieu Muffato, et al.Nature Ecology & Evolution|January 16, 2023
Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdomMatthieu Muffato, Alexandra Louis, Nga Thi Thuy Nguyen, et al.Bioinformatics Advances|January 30, 2023
FUSTA: leveraging FUSE for manipulation of multiFASTA files at scaleFranklin Delehelle, Hugues Roest CrolliusGenome Biology|May 14, 2010
Nucleosome rotational setting is associated with transcriptional regulation in promoters of tissue-specific human genesCharles Hebert, Hugues Roest CrolliusPageof 9