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Journal of Chemical Theory and Computation|March 12, 2026
Fast Generation of Simulation-Quality Structural Ensembles of Mixed-Chirality Cyclic Peptides via Diffusion ModelsNomindari Bayaraa, Maxim Secor, Marc L Descoteaux, et al.Bioinformatics (Oxford, England)|July 14, 2020
GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networksKapil Devkota, James M Murphy, Lenore J CowenBiochemical Society Transactions|April 15, 2017
Bio-Zombie: the rise of pseudoenzymes in biologyJames M Murphy, Hesso Farhan, Patrick A EyersJournal of Chemical Theory and Computation|July 4, 2012
Are Protein Force Fields Getting Better? A Systematic Benchmark on 524 Diverse NMR MeasurementsKyle A Beauchamp, Yu-Shan Lin, Rhiju Das, et al.Journal of Chemical Theory and Computation|April 1, 2016
Insights into How Cyclic Peptides Switch ConformationsSean M McHugh, Julia R Rogers, Hongtao Yu, et al.Rapid Communications in Mass Spectrometry : RCM|December 17, 2009
Applications of electrospray laser desorption ionization mass spectrometry for document examinationSy-Chyi Cheng, Yu-Shan Lin, Ming-Zong Huang, et al.Physical Chemistry Chemical Physics : PCCP|February 4, 2017
Toward accurately modeling N-methylated cyclic peptidesDiana P Slough, Hongtao Yu, Sean M McHugh, et al.Physical Chemistry Chemical Physics : PCCP|January 17, 2017
Mapping the sequence-structure relationships of simple cyclic hexapeptidesSean M McHugh, Hongtao Yu, Diana P Slough, et al.Proceedings of the National Academy of Sciences of the United States of America|July 11, 2012
Simple few-state models reveal hidden complexity in protein foldingKyle A Beauchamp, Robert McGibbon, Yu-Shan Lin, et al.Chemistry, an Asian Journal|January 26, 2025
Frameworks Construction with Rhodium-Organic Cuboctahedra via Rigid Linker IncorporationYu-Shan Lin, Javier Lopez-Cabrelles, Chia-Her Lin, et al.Pageof 40