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The Journal of Chemical Physics|May 8, 2012
Towards the prediction of order parameters from molecular dynamics simulations in proteinsJuan R Perilla, Thomas B WoolfMethods in Molecular Biology (Clifton, N.J.)|October 22, 2014
Computing ensembles of transitions with molecular dynamics simulationsJuan R Perilla, Thomas B WoolfProteins|January 26, 2013
Molecular dynamics simulations of transitions for ECD epidermal growth factor receptors show key differences between human and drosophila forms of the receptorsJuan R Perilla, Daniel J Leahy, Thomas B WoolfJournal of Computational Chemistry|December 7, 2010
Computing ensembles of transitions from stable states: Dynamic importance samplingJuan R Perilla, Oliver Beckstein, Elizabeth J Denning, et al.Journal of Molecular Biology|September 16, 2009
Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of openclosed transitionsOliver Beckstein, Elizabeth J Denning, Juan R Perilla, et al.Nature Communications|July 20, 2017
Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulationsJuan R Perilla, Klaus SchultenMethods in Molecular Biology (Clifton, N.J.)|March 30, 2018
Molecular Dynamics Simulations of Protein-Drug Complexes: A Computational Protocol for Investigating the Interactions of Small-Molecule Therapeutics with Biological Targets and BiosensorsJodi A Hadden, Juan R PerillaCurrent Opinion in Virology|September 6, 2018
All-atom virus simulationsJodi A Hadden, Juan R PerillaTrends in Biochemical Sciences|April 4, 2016
Molecular Architecture of the Retroviral CapsidJuan R Perilla, Angela M GronenbornJournal of Computational Chemistry|May 25, 2006
Multiple pathways in conformational transitions of the alanine dipeptide: an application of dynamic importance samplingHyunbum Jang, Thomas B WoolfPageof 12