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Microbial Genomics|January 19, 2026
Machine learning-based lineage prediction from antimicrobial susceptibility testing phenotypes for <i>Escherichia coli</i> sequence type 131 clade C surveillance across infection typesTheodor A Ross, Anna K Pöntinen, Einar Holsbø, et al.
Plos One|May 14, 2013
Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population datasetMarcus A Shepheard, Vicki M Fleming, Thomas R Connor, et al.
Genome Research|June 10, 2021
The effect of recombination on the evolution of a population of <i>Neisseria meningitidis</i>Neil MacAlasdair, Maiju Pesonen, Ola Brynildsrud, et al.
Nucleic Acids Research|November 9, 2011
Detection of recombination events in bacterial genomes from large population samplesPekka Marttinen, William P Hanage, Nicholas J Croucher, et al.
BMC Microbiology|September 19, 2012
Clinical isolates of Yersinia enterocolitica biotype 1A represent two phylogenetic lineages with differing pathogenicity-related propertiesLeila M Sihvonen, Kaisa Jalkanen, Elisa Huovinen, et al.
Plos One|September 1, 2009
Full likelihood analysis of genetic risk with variable age at onset disease--combining population-based registry data and demographic informationJanne Pitkäniemi, Sirkka-Liisa Varvio, Jukka Corander, et al.
Microbial Genomics|May 30, 2018
SuperDCA for genome-wide epistasis analysisSanteri Puranen, Maiju Pesonen, Johan Pensar, et al.
Microbial Genomics|February 11, 2026
Sequence type and strain-level detection of <i>Klebsiella pneumoniae</i> in culture-enriched bacterial metagenomes: comparative performance of mSWEEP and StrainGE bioinformatic toolsDorota Julia Buczek, Wasifa Kabir, Kenneth Lindstedt, et al.
The Lancet. Microbe|December 7, 2024
Geographical variation in the incidence of colorectal cancer and urinary tract cancer is associated with population exposure to colibactin-producing Escherichia coliTommi Mäklin, Aurora Taira, Sergio Arredondo-Alonso, et al.
Microbial Genomics|November 30, 2020
Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, <i>Enterococcus faecium</i>Janetta Top, Sergio Arredondo-Alonso, Anita C Schürch, et al.
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