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Microorganisms|October 27, 2022
Interactions between Medications and the Gut Microbiome in Inflammatory Bowel DiseaseJulia Eckenberger, James C Butler, Charles N Bernstein, et al.Scientific Reports|September 18, 2021
Biopsy bacterial signature can predict patient tissue malignancyGlenn Hogan, Julia Eckenberger, Neegam Narayanen, et al.Gut Microbes|August 2, 2022
Improved gut microbiome recovery following drug therapy is linked to abundance and replication of probiotic strainsJamie FitzGerald, Shriram Patel, Julia Eckenberger, et al.Microbiome|February 3, 2021
Japanese quail (Coturnix japonica) as a novel model to study the relationship between the avian microbiome and microbial endocrinology-based host-microbe interactionsJoshua M Lyte, James Keane, Julia Eckenberger, et al.Poultry Science|February 6, 2024
Cold stress initiates catecholaminergic and serotonergic responses in the chicken gut that are associated with functional shifts in the microbiomeJoshua M Lyte, Julia Eckenberger, James Keane, et al.BMC Microbiology|January 8, 2026
Targeted isolation of bacteria with potential to competitively exclude Staphylococcus aureus in the upper respiratory tract of pigsAbel A Vlasblom, Shriram Patel, Peadar G Lawlor, et al.Msystems|September 17, 2024
The developing pig respiratory microbiome harbors strains antagonistic to common respiratory pathogensAbel A Vlasblom, Birgitta Duim, Shriram Patel, et al.Frontiers in Microbiology|October 9, 2023
Machine learning approaches in microbiome research: challenges and best practicesGeorgios Papoutsoglou, Sonia Tarazona, Marta B Lopes, et al.Gut|June 16, 2020
Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental studyAdam G Clooney, Julia Eckenberger, Emilio Laserna-Mendieta, et al.Journal of Crohn'S & Colitis|November 19, 2025
Automated real-time imaging of intestinal barrier integrity and molecular profiling for early outcome prediction in inflammatory bowel disease: endo-histo-barrier-omics studyMarietta Iacucci, Snehali Majumder, Irene Zammarchi, et al.Pageof 2