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Proteins|June 28, 2005
ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5Kevin Wiehe, Brian Pierce, Julian Mintseris, et al.Proceedings of the National Academy of Sciences of the United States of America|December 19, 2019
High-density chemical cross-linking for modeling protein interactionsJulian Mintseris, Steven P GygiBMC Bioinformatics|October 5, 2006
Design of a combinatorial DNA microarray for protein-DNA interaction studiesJulian Mintseris, Michael B EisenProteins|April 16, 2003
A novel shape complementarity scoring function for protein-protein dockingRong Chen, Zhiping WengBriefings in Bioinformatics|December 3, 2015
Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing dataJunko Tsuji, Zhiping WengProteins|January 25, 2008
A combination of rescoring and refinement significantly improves protein docking performanceBrian Pierce, Zhiping WengProteins|March 22, 2007
ZRANK: reranking protein docking predictions with an optimized energy functionBrian Pierce, Zhiping WengBiorxiv : the Preprint Server for Biology|February 12, 2026
Natural language-based representation and modeling of RBP bindingShaimae Elhajjajy, Zhiping WengProteins|December 21, 2004
FAST: a novel protein structure alignment algorithmJianhua Zhu, Zhiping WengGenome Informatics. International Conference on Genome Informatics|December 20, 2005
Improvement of TRANSFAC matrices using multiple local alignment of transcription factor binding site sequencesYutao Fu, Zhiping WengPageof 37