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Nucleic Acids Research|November 16, 2017
Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomesDusan Racko, Fabrizio Benedetti, Julien Dorier, et al.
Nucleic Acids Research|July 8, 2015
Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenationDusan Racko, Fabrizio Benedetti, Julien Dorier, et al.
Methods in Molecular Biology (Clifton, N.J.)|August 27, 2017
Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA GyraseDusan Racko, Fabrizio Benedetti, Julien Dorier, et al.
Nucleic Acids Research|October 4, 2017
Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombeFabrizio Benedetti, Dusan Racko, Julien Dorier, et al.
BMC Bioinformatics|October 8, 2016
Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization methodJulien Dorier, Isaac Crespo, Anne Niknejad, et al.
Journal of Immunological Methods|February 16, 2024
Comparative assessment of cytometry by time-of-flight and full spectral flow cytometry based on a 33-color antibody panelAntonia Schäfer, Sènan Mickael D'Almeida, Julien Dorier, et al.
Polymers|April 11, 2019
Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded KnotoidsDimos Goundaroulis, Neslihan Gügümcü, Sofia Lambropoulou, et al.
Nucleic Acids Research|July 6, 2019
Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanesJorge B Schvartzman, Pablo Hernández, Dora B Krimer, et al.
Genes & Development|April 16, 2025
A boundary-defining protein facilitates megabase-scale regulatory chromosomal loop formation in <i>Drosophila</i> neuronsMarion Mouginot, Sahar Hani, Pascal Cousin, et al.
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