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Food Chemistry. Molecular Sciences|April 13, 2022
Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO databaseAssia Saltykova, Julien Van Braekel, Nina Papazova, et al.
International Journal of Molecular Sciences|January 8, 2020
TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIESRaf Winand, Bert Bogaerts, Stefan Hoffman, et al.
Microorganisms|April 30, 2021
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic CirculationBert Bogaerts, Raf Winand, Julien Van Braekel, et al.
Frontiers in Microbiology|March 22, 2019
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-ConceptBert Bogaerts, Raf Winand, Qiang Fu, et al.
BMC Genomics|August 7, 2025
Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databasesRaf Winand, Elizabet D'hooge, Alexander Van Uffelen, et al.
Journal of Clinical Microbiology|April 1, 2021
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico ApproachesBert Bogaerts, Thomas Delcourt, Karine Soetaert, et al.
Microbial Genomics|March 3, 2021
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methodsBert Bogaerts, Stéphanie Nouws, Bavo Verhaegen, et al.
BMC Genomics|January 8, 2025
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detectionBert Bogaerts, Julien Van Braekel, Alexander Van Uffelen, et al.
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