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Journal of Chemical Theory and Computation
|
October 22, 2025
Assessment of RNA Force Fields for Dynamic Docking of Small Molecules Using Multicanonical MD Simulations
Gert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, et al.
Journal of Biochemistry
|
January 6, 2005
General dynamic properties of Abeta12-36 amyloid peptide involved in Alzheimer's disease from unfolding simulation
Shinya Suzuki, Oxana V Galzitskaya, Daisuke Mitomo, et al.
Protein Science : a Publication of the Protein Society
|
November 18, 2010
Ab initio simulation of a 57-residue protein in explicit solvent reproduces the native conformation in the lowest free-energy cluster
Jinzen Ikebe, Daron M Standley, Haruki Nakamura, et al.
Scientific Reports
|
January 31, 2020
Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations
Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
The Journal of Physical Chemistry. B
|
April 19, 2007
Folding of the 25 residue Abeta(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged one
Narutoshi Kamiya, Daisuke Mitomo, Joan-Emma Shea, et al.
Nucleic Acids Research
|
January 9, 2018
Phosphorylation of an intrinsically disordered region of Ets1 shifts a multi-modal interaction ensemble to an auto-inhibitory state
Kota Kasahara, Masaaki Shiina, Junichi Higo, et al.
Journal of Computational Chemistry
|
March 23, 2002
Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations
Satoshi Ono, Masataka Kuroda, Junichi Higo, et al.
Biopolymers
|
January 31, 2009
Conformational requirement on peptides to exert laminin's activities and search for protein segments with laminin's activities
Koji Umezawa, Jinzen Ikebe, Motoyoshi Nomizu, et al.
Journal of Chemical Theory and Computation
|
March 12, 2019
Multimodal Structural Distribution of the p53 C-Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder
Shinji Iida, Takeshi Kawabata, Kota Kasahara, et al.
Biomolecules
|
June 28, 2014
Conformational Ensembles of an Intrinsically Disordered Protein pKID with and without a KIX Domain in Explicit Solvent Investigated by All-Atom Multicanonical Molecular Dynamics
Koji Umezawa, Jinzen Ikebe, Mitsunori Takano, et al.
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Showing results (31-40 of 65) with videos related to
Sort By:
Page
of 7
Journal of Chemical Theory and Computation
|
October 22, 2025
Assessment of RNA Force Fields for Dynamic Docking of Small Molecules Using Multicanonical MD Simulations
Gert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, et al.
Journal of Biochemistry
|
January 6, 2005
General dynamic properties of Abeta12-36 amyloid peptide involved in Alzheimer's disease from unfolding simulation
Shinya Suzuki, Oxana V Galzitskaya, Daisuke Mitomo, et al.
Protein Science : a Publication of the Protein Society
|
November 18, 2010
Ab initio simulation of a 57-residue protein in explicit solvent reproduces the native conformation in the lowest free-energy cluster
Jinzen Ikebe, Daron M Standley, Haruki Nakamura, et al.
Scientific Reports
|
January 31, 2020
Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations
Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
The Journal of Physical Chemistry. B
|
April 19, 2007
Folding of the 25 residue Abeta(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged one
Narutoshi Kamiya, Daisuke Mitomo, Joan-Emma Shea, et al.
Nucleic Acids Research
|
January 9, 2018
Phosphorylation of an intrinsically disordered region of Ets1 shifts a multi-modal interaction ensemble to an auto-inhibitory state
Kota Kasahara, Masaaki Shiina, Junichi Higo, et al.
Journal of Computational Chemistry
|
March 23, 2002
Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations
Satoshi Ono, Masataka Kuroda, Junichi Higo, et al.
Biopolymers
|
January 31, 2009
Conformational requirement on peptides to exert laminin's activities and search for protein segments with laminin's activities
Koji Umezawa, Jinzen Ikebe, Motoyoshi Nomizu, et al.
Journal of Chemical Theory and Computation
|
March 12, 2019
Multimodal Structural Distribution of the p53 C-Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder
Shinji Iida, Takeshi Kawabata, Kota Kasahara, et al.
Biomolecules
|
June 28, 2014
Conformational Ensembles of an Intrinsically Disordered Protein pKID with and without a KIX Domain in Explicit Solvent Investigated by All-Atom Multicanonical Molecular Dynamics
Koji Umezawa, Jinzen Ikebe, Mitsunori Takano, et al.
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