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June 30, 2006
Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model
Daisuke Mitomo, Hironori K Nakamura, Kazuyoshi Ikeda, et al.
Biophysics and Physicobiology
|
February 12, 2024
Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics
Junichi Higo, Gert-Jan Bekker, Narutoshi Kamiya, et al.
Scientific Reports
|
March 4, 2021
Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations
Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
Protein Science : a Publication of the Protein Society
|
July 28, 2007
Simulation study on the disordered state of an Alzheimer's beta amyloid peptide Abeta(12 36) in water consisting of random-structural, beta-structural, and helical clusters
Jinzen Ikebe, Narutoshi Kamiya, Jun-Ichi Ito, et al.
BMC Structural Biology
|
May 21, 2009
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins
Jun-ichi Ito, Yuki Sonobe, Kazuyoshi Ikeda, et al.
Journal of Chemical Information and Modeling
|
August 7, 2015
Computational Study of Drug Binding Affinity to Influenza A Neuraminidase Using Smooth Reaction Path Generation (SRPG) Method
Hung Nguyen, Tien Tran, Yoshifumi Fukunishi, et al.
Journal of Computational Chemistry
|
June 6, 2015
Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking
Junichi Higo, Bhaskar Dasgupta, Tadaaki Mashimo, et al.
Biophysical Journal
|
September 8, 2016
Dynamics of the Extended String-Like Interaction of TFIIE with the p62 Subunit of TFIIH
Masahiko Okuda, Junichi Higo, Tadashi Komatsu, et al.
Biophysics and Physicobiology
|
November 26, 2020
myPresto/omegagene 2020: a molecular dynamics simulation engine for virtual-system coupled sampling
Kota Kasahara, Hiroki Terazawa, Hayato Itaya, et al.
Scientific Reports
|
January 11, 2026
Affinity of drug candidates binding to SARS-CoV-2 PLpro assessed using a generalized-ensemble method
Masashi Muramoto, Simon Hikiri, Suzuka Saito, et al.
Page
of 7
Search research articles
Search
Showing results (41-50 of 65) with videos related to
Sort By:
Page
of 7
Proteins
|
June 30, 2006
Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model
Daisuke Mitomo, Hironori K Nakamura, Kazuyoshi Ikeda, et al.
Biophysics and Physicobiology
|
February 12, 2024
Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics
Junichi Higo, Gert-Jan Bekker, Narutoshi Kamiya, et al.
Scientific Reports
|
March 4, 2021
Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations
Gert-Jan Bekker, Ikuo Fukuda, Junichi Higo, et al.
Protein Science : a Publication of the Protein Society
|
July 28, 2007
Simulation study on the disordered state of an Alzheimer's beta amyloid peptide Abeta(12 36) in water consisting of random-structural, beta-structural, and helical clusters
Jinzen Ikebe, Narutoshi Kamiya, Jun-Ichi Ito, et al.
BMC Structural Biology
|
May 21, 2009
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins
Jun-ichi Ito, Yuki Sonobe, Kazuyoshi Ikeda, et al.
Journal of Chemical Information and Modeling
|
August 7, 2015
Computational Study of Drug Binding Affinity to Influenza A Neuraminidase Using Smooth Reaction Path Generation (SRPG) Method
Hung Nguyen, Tien Tran, Yoshifumi Fukunishi, et al.
Journal of Computational Chemistry
|
June 6, 2015
Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking
Junichi Higo, Bhaskar Dasgupta, Tadaaki Mashimo, et al.
Biophysical Journal
|
September 8, 2016
Dynamics of the Extended String-Like Interaction of TFIIE with the p62 Subunit of TFIIH
Masahiko Okuda, Junichi Higo, Tadashi Komatsu, et al.
Biophysics and Physicobiology
|
November 26, 2020
myPresto/omegagene 2020: a molecular dynamics simulation engine for virtual-system coupled sampling
Kota Kasahara, Hiroki Terazawa, Hayato Itaya, et al.
Scientific Reports
|
January 11, 2026
Affinity of drug candidates binding to SARS-CoV-2 PLpro assessed using a generalized-ensemble method
Masashi Muramoto, Simon Hikiri, Suzuka Saito, et al.
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of 7