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Biorxiv : the Preprint Server for Biology|January 23, 2024
Pseudo-spectral angle mapping for automated pixel-level analysis of highly multiplexed tissue image dataMadeleine S Durkee, Junting Ai, Gabriel Casella, et al.Journal of Medical Imaging (Bellingham, Wash.)|December 12, 2024
Pseudo-spectral angle mapping for pixel and cell classification in highly multiplexed immunofluorescence imagesMadeleine S Torcasso, Junting Ai, Gabriel Casella, et al.Arteriosclerosis, Thrombosis, and Vascular Biology|March 8, 2014
Scavenger receptor BI and high-density lipoprotein regulate thymocyte apoptosis in sepsisLing Guo, Zhong Zheng, Junting Ai, et al.Nature Immunology|February 20, 2019
Quantifying in situ adaptive immune cell cognate interactions in humansVladimir M Liarski, Adam Sibley, Nicholas van Panhuys, et al.Biorxiv : the Preprint Server for Biology|February 6, 2026
High-dimensional spatial proteomics and novel machine learning pipeline identifies disease specific renal damage statesThao Cao, Madeleine S Torcasso, Junting Ai, et al.Nature Immunology|September 4, 2019
CXCR4 signaling directs Igk recombination and the molecular mechanisms of late B lymphopoiesisMalay Mandal, Michael K Okoreeh, Domenick E Kennedy, et al.The Journal of Clinical Investigation|May 24, 2022
Specific in situ inflammatory states associate with progression to renal failure in lupus nephritisRebecca Abraham, Madeleine S Durkee, Junting Ai, et al.Nature Immunology|April 29, 2020
Novel specialized cell state and spatial compartments within the germinal centerDomenick E Kennedy, Michael K Okoreeh, Mark Maienschein-Cline, et al.Biorxiv : the Preprint Server for Biology|May 7, 2024
BRWD1 establishes epigenetic states for germinal center initiation, maintenance, and functionNathaniel E Wright, Domenick E Kennedy, Junting Ai, et al.The Journal of Clinical Investigation|September 4, 2025
Immune cell quantification of in situ inflammation partitions human lupus nephritis into mechanistic subtypesGabriel Casella, Madeleine S Torcasso, Junting Ai, et al.Pageof 3